Initial commitHEADmaster

18 files changed, 300 insertions, 0 deletions

diff --git a/include/HyperNeat/Utils/Atomic.hpp b/include/HyperNeat/Utils/Atomic.hpp
new file mode 100644
index 0000000..850a06e
--- /dev/null
+++ b/include/HyperNeat/Utils/Atomic.hpp
@@ -0,0 +1,12 @@
+#ifndef __HYPERNEAT_ATOM_HPP__
+#define __HYPERNEAT_ATOM_HPP__
+
+#include <atomic>
+
+namespace hyperneat
+{
+    template <class T>
+    using Atomic = std::atomic<T>;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/Function.hpp b/include/HyperNeat/Utils/Function.hpp
new file mode 100644
index 0000000..ebcb27b
--- /dev/null
+++ b/include/HyperNeat/Utils/Function.hpp
@@ -0,0 +1,12 @@
+#ifndef __HYPERNEAT_FUNCTION_HPP__
+#define __HYPERNEAT_FUNCTION_HPP__
+
+#include <functional>
+
+namespace hyperneat
+{
+    template <class F>
+    using Function = std::function<F>;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/LoadFile.hpp b/include/HyperNeat/Utils/LoadFile.hpp
new file mode 100644
index 0000000..1960e90
--- /dev/null
+++ b/include/HyperNeat/Utils/LoadFile.hpp
@@ -0,0 +1,40 @@
+#ifndef __HYPERNEAT_LOADFILE_HPP__
+#define __HYPERNEAT_LOADFILE_HPP__
+
+#include <iostream>
+#include <HyperNeat/Utils/String.hpp>
+#include <HyperNeat/Utils/Vector.hpp>
+
+namespace hyperneat
+{
+    using Istream = std::istream;
+
+    class Genome;
+    class Organism;
+    class Population;
+    class NoveltyMetric;
+    class PopulationPrms;
+    class NoveltyMetricPrms;
+
+    class LoadFile
+    {
+    public:
+        LoadFile(Istream& stream);
+
+        void loadPopulation(Population& population);
+        void loadPopulationPrms(PopulationPrms& prms);
+        void loadNeuralNetPrms(NeuralNetPrms& prms);
+        void loadNoveltyMetric(NoveltyMetric& noveltyMetric);
+        void loadNoveltyMetricPrms(NoveltyMetricPrms& prms);
+        void loadOrganism(Organism& organism);
+        void loadGenome(Genome& genome);
+
+    private:
+        Istream& nextPrm(bool arrayVal = false);
+        Istream& nextArrayValue();
+
+        Istream& _stream;
+    };
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/Map.hpp b/include/HyperNeat/Utils/Map.hpp
new file mode 100644
index 0000000..c735ab3
--- /dev/null
+++ b/include/HyperNeat/Utils/Map.hpp
@@ -0,0 +1,12 @@
+#ifndef __HYPERNEAT_MAP_HPP__
+#define __HYPERNEAT_MAP_HPP__
+
+#include <map>
+
+namespace hyperneat
+{
+    template <class K, class V>
+    using Map = std::map<K, V>;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/NodeTypes.hpp b/include/HyperNeat/Utils/NodeTypes.hpp
new file mode 100644
index 0000000..815214e
--- /dev/null
+++ b/include/HyperNeat/Utils/NodeTypes.hpp
@@ -0,0 +1,22 @@
+#ifndef __HYPERNEAT_NODETYPES_HPP__
+#define __HYPERNEAT_NODETYPES_HPP__
+
+#include <HyperNeat/Utils/String.hpp>
+
+namespace hyperneat
+{
+    enum class NodeType {
+        NULL_TYPE = -1,
+        SIGMOID   =  0,
+        GAUSSIAN  =  1,
+        SINE      =  2,
+        ABSOLUTE  =  3,
+    };
+
+    String nodeToString(NodeType type);
+    NodeType stringToNode(const String& str);
+
+    const size_t NODE_TYPES_COUNT = 4;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/Pi.hpp b/include/HyperNeat/Utils/Pi.hpp
new file mode 100644
index 0000000..00a3df2
--- /dev/null
+++ b/include/HyperNeat/Utils/Pi.hpp
@@ -0,0 +1,9 @@
+#ifndef __HYPERNEAT_PI_HPP__
+#define __HYPERNEAT_PI_HPP__
+
+namespace hyperneat
+{
+    const double PI = 3.14159265359;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/Point.hpp b/include/HyperNeat/Utils/Point.hpp
new file mode 100644
index 0000000..ba51bac
--- /dev/null
+++ b/include/HyperNeat/Utils/Point.hpp
@@ -0,0 +1,21 @@
+#ifndef __HYPERNEAT_POINT_HPP__
+#define __HYPERNEAT_POINT_HPP__
+
+namespace hyperneat
+{
+    class Point
+    {
+    public:
+        Point() = default;
+        Point(double x, double y);
+
+        double distance(const Point& other) const;
+        bool operator== (const Point& other) const;
+        bool operator< (const Point& other) const;
+
+        double _x = 0.0;
+        double _y = 0.0;
+    };
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/Pointer.hpp b/include/HyperNeat/Utils/Pointer.hpp
new file mode 100644
index 0000000..f02e853
--- /dev/null
+++ b/include/HyperNeat/Utils/Pointer.hpp
@@ -0,0 +1,12 @@
+#ifndef __HYPERNEAT_POINTER_HPP__
+#define __HYPERNEAT_POINTER_HPP__
+
+#include <memory>
+
+namespace hyperneat
+{
+    template <class T>
+    using Pointer = std::unique_ptr<T>;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/Random.hpp b/include/HyperNeat/Utils/Random.hpp
new file mode 100644
index 0000000..4a4d979
--- /dev/null
+++ b/include/HyperNeat/Utils/Random.hpp
@@ -0,0 +1,14 @@
+#ifndef __HYPERNEAT_RANDOM_HPP__
+#define __HYPERNEAT_RANDOM_HPP__
+
+#include <random>
+
+namespace hyperneat
+{
+    using RandGen  = std::mt19937_64;
+    using IntDist  = std::uniform_int_distribution<size_t>;
+    using RealDist = std::uniform_real_distribution<double>;
+    using BellDist = std::normal_distribution<double>;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/SaveFile.hpp b/include/HyperNeat/Utils/SaveFile.hpp
new file mode 100644
index 0000000..18cad38
--- /dev/null
+++ b/include/HyperNeat/Utils/SaveFile.hpp
@@ -0,0 +1,45 @@
+#ifndef __HYPERNEAT_SAVEFILE_HPP__
+#define __HYPERNEAT_SAVEFILE_HPP__
+
+#include <iostream>
+#include <HyperNeat/Utils/String.hpp>
+#include <HyperNeat/Utils/Vector.hpp>
+
+namespace hyperneat
+{
+    using Ostream = std::ostream;
+
+    class Genome;
+    class Organism;
+    class Population;
+    class NoveltyMetric;
+    class NeuralNetPrms;
+    class PopulationPrms;
+    class NoveltyMetricPrms;
+
+    class SaveFile
+    {
+    public:
+        SaveFile(Ostream& stream);
+
+        void savePopulation(Population& population, bool shuttedDown = false, size_t tabs = 0,
+            const String& prefix = "");
+        void savePopulationPrms(const PopulationPrms& prms, size_t tabs = 0, const String& prefix = "");
+        void saveNeuralNetPrms(const NeuralNetPrms& prms, size_t tabs = 0, const String& prefix = "");
+        void saveOrganism(const Organism& organism, bool shuttedDown = false, size_t tabs = 0,
+            const String& prefix = "");
+        void saveGenome(const Genome& genome, size_t tabs = 0, const String& prefix = "");
+        void saveNoveltyMetric(const NoveltyMetric& noveltyMetric, bool shuttedDown = false, size_t tabs = 0,
+            const String& prefix = "");
+        void saveNoveltyMetricPrms(const NoveltyMetricPrms& noveltyMetricPrms, size_t tabs = 0,
+            const String& prefix = "");
+
+    private:
+        Ostream& print(size_t tabs = 0);
+        String   newl(size_t lines = 1);
+
+        Ostream& _stream;
+    };
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/Set.hpp b/include/HyperNeat/Utils/Set.hpp
new file mode 100644
index 0000000..d403e6b
--- /dev/null
+++ b/include/HyperNeat/Utils/Set.hpp
@@ -0,0 +1,12 @@
+#ifndef __HYPERNEAT_SET_HPP__
+#define __HYPERNEAT_SET_HPP__
+
+#include <set>
+
+namespace hyperneat
+{
+    template <class V>
+    using Set = std::set<V>;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/Size.hpp b/include/HyperNeat/Utils/Size.hpp
new file mode 100644
index 0000000..0ef5616
--- /dev/null
+++ b/include/HyperNeat/Utils/Size.hpp
@@ -0,0 +1,12 @@
+#ifndef __HYPERNEAT_SIZE_HPP__
+#define __HYPERNEAT_SIZE_HPP__
+
+#include <cstddef>
+#include <climits>
+
+namespace hyperneat
+{
+    using std::size_t;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/String.hpp b/include/HyperNeat/Utils/String.hpp
new file mode 100644
index 0000000..ab74d45
--- /dev/null
+++ b/include/HyperNeat/Utils/String.hpp
@@ -0,0 +1,11 @@
+#ifndef HYPERNEAT_STRING_HPP
+#define HYPERNEAT_STRING_HPP
+
+#include <string>
+
+namespace hyperneat
+{
+    using String = std::string;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/Thread.hpp b/include/HyperNeat/Utils/Thread.hpp
new file mode 100644
index 0000000..4b861e3
--- /dev/null
+++ b/include/HyperNeat/Utils/Thread.hpp
@@ -0,0 +1,11 @@
+#ifndef __HYPERNEAT_THREAD_HPP__
+#define __HYPERNEAT_THREAD_HPP__
+
+#include <thread>
+
+namespace hyperneat
+{
+    using Thread = std::thread;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/ValueMap.hpp b/include/HyperNeat/Utils/ValueMap.hpp
new file mode 100644
index 0000000..c2910b5
--- /dev/null
+++ b/include/HyperNeat/Utils/ValueMap.hpp
@@ -0,0 +1,12 @@
+#ifndef __HYPERNEAT_VALUEMAP_HPP__
+#define __HYPERNEAT_VALUEMAP_HPP__
+
+#include <HyperNeat/Utils/Vector.hpp>
+#include <HyperNeat/Utils/ValuePoint.hpp>
+
+namespace hyperneat
+{
+    using ValueMap = Vector<ValuePoint>;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/ValuePoint.hpp b/include/HyperNeat/Utils/ValuePoint.hpp
new file mode 100644
index 0000000..b9e15ab
--- /dev/null
+++ b/include/HyperNeat/Utils/ValuePoint.hpp
@@ -0,0 +1,19 @@
+#ifndef __HYPERNEAT_VALUEPOINT_HPP__
+#define __HYPERNEAT_VALUEPOINT_HPP__
+
+#include <HyperNeat/Utils/Point.hpp>
+
+namespace hyperneat
+{
+    class ValuePoint : public Point
+    {
+    public:
+        ValuePoint() = default;
+        ValuePoint(double x, double y, double value, double segment);
+
+        double _value   = 0.0;
+        double _segment = 0.0;
+    };
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/Vector.hpp b/include/HyperNeat/Utils/Vector.hpp
new file mode 100644
index 0000000..f7352e4
--- /dev/null
+++ b/include/HyperNeat/Utils/Vector.hpp
@@ -0,0 +1,12 @@
+#ifndef __HYPERNEAT_VECTOR_HPP__
+#define __HYPERNEAT_VECTOR_HPP__
+
+#include <vector>
+
+namespace hyperneat
+{
+    template <class V>
+    using Vector = std::vector<V>;
+}
+
+#endif
diff --git a/include/HyperNeat/Utils/Vector2D.hpp b/include/HyperNeat/Utils/Vector2D.hpp
new file mode 100644
index 0000000..257dbe6
--- /dev/null
+++ b/include/HyperNeat/Utils/Vector2D.hpp
@@ -0,0 +1,12 @@
+#ifndef __HYPERNEAT_VECTOR2D_HPP__
+#define __HYPERNEAT_VECTOR2D_HPP__
+
+#include <Hyperneat/Utils/Vector.hpp>
+
+namespace hyperneat
+{
+    template <class V>
+    using Vector2D = Vector<Vector<V>>;
+}
+
+#endif